##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index5_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20800647	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.15164066771577	33.0	31.0	34.0	31.0	34.0
2	32.40561584454561	34.0	31.0	34.0	31.0	34.0
3	32.424686309036446	34.0	31.0	34.0	30.0	34.0
4	36.063926088452924	37.0	35.0	37.0	35.0	37.0
5	35.94669228317754	37.0	35.0	37.0	35.0	37.0
6	35.920780685331565	37.0	35.0	37.0	35.0	37.0
7	35.86633459045769	37.0	35.0	37.0	35.0	37.0
8	35.86205698313134	37.0	35.0	37.0	35.0	37.0
9	37.57291140991912	39.0	37.0	39.0	35.0	39.0
10-14	37.739934204931224	39.2	37.2	39.4	34.6	39.4
15-19	38.81762263452671	40.0	38.0	41.0	34.8	41.0
20-24	38.683777788258226	40.0	38.0	41.0	34.0	41.0
25-29	38.455500100549756	40.0	38.0	41.0	34.0	41.0
30-34	38.15733655784842	40.0	37.8	41.0	33.2	41.0
35-39	37.86474885132179	40.0	37.0	41.0	33.0	41.0
40-44	37.65926286812137	39.8	36.8	41.0	32.2	41.0
45-49	37.240173317685745	39.0	35.8	41.0	31.0	41.0
50-54	36.920176742579216	39.0	35.0	40.6	31.0	41.0
55-59	36.68542856383265	38.6	35.0	40.6	31.0	41.0
60-64	35.991037269177255	37.2	34.6	40.0	30.0	41.0
65-69	35.22803100307409	36.0	34.0	39.2	29.4	41.0
70-74	34.373648021621634	35.0	33.6	38.0	29.0	40.2
75-79	33.239844587526534	34.8	32.4	36.2	27.6	39.0
80-84	32.92282473713438	35.0	33.0	35.6	27.6	37.2
85-89	32.117763769559666	35.0	32.8	35.0	26.4	36.2
90	31.63626121822076	35.0	32.0	35.0	26.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	16.0
12	103.0
13	803.0
14	3569.0
15	8780.0
16	14959.0
17	20206.0
18	25592.0
19	31262.0
20	37761.0
21	45814.0
22	53371.0
23	64606.0
24	80828.0
25	105732.0
26	140383.0
27	187870.0
28	247546.0
29	321485.0
30	412351.0
31	521878.0
32	659918.0
33	853137.0
34	1156645.0
35	1667947.0
36	2613537.0
37	3969291.0
38	4675293.0
39	2809541.0
40	70423.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.871488692004203	12.91814722420354	11.451398971484709	50.75896511230754
2	22.24943772181702	19.314456901268503	34.90047208627693	23.535633290637545
3	25.814427791597062	21.764135509823323	22.868298279375637	29.55313841920398
4	27.794765230139234	27.407070558910977	19.616543658473702	25.181620552476087
5	29.351615841564925	29.719585164826846	21.655537926296233	19.273261067311992
6	24.41428384415158	32.924451821138064	21.714262061175308	20.94700227353505
7	21.528566934784937	19.07338740698444	37.52398600606178	21.874059652168835
8	21.665633766103525	22.444917218199993	29.174150207923823	26.715298807772665
9	21.579690958269556	21.255641703628996	31.670452922330245	25.49421441577121
10-14	24.59499945188174	26.366196900328504	24.72370171524525	24.315101932544504
15-19	24.917236063549996	25.28219370689861	25.210412143000298	24.590158086551096
20-24	24.70328524277634	25.51018076958224	25.525155543808726	24.261378443832694
25-29	24.57156115121368	25.504658969992565	25.487247777243656	24.4365321015501
30-34	24.629504367898708	25.438502346158558	25.41889301284666	24.51310027309607
35-39	24.666600697952333	25.561184157204593	25.36660112968811	24.405614015154963
40-44	24.614859051172395	25.400881395799374	25.527620359419117	24.456639193609114
45-49	24.54738834277208	25.450546287427596	25.45486933334113	24.5471960364592
50-54	24.584035506093183	25.542224100804688	25.47175898924161	24.40198140386052
55-59	24.5810482907901	25.458370015165027	25.466486170901376	24.494095523143493
60-64	24.497130976344174	25.498551825055806	25.56085890444999	24.443458294150027
65-69	24.517266351081396	25.591482003400422	25.529407804411093	24.36184384110709
70-74	24.583265166582105	25.51929602565356	25.46897747257706	24.428461335187276
75-79	24.543874103215067	25.484560614264893	25.54931936723727	24.422245915282762
80-84	24.489897938626562	25.614917448063363	25.55331416581648	24.341870447493598
85-89	24.56939649875703	25.575769720188635	25.484485789433503	24.370347991620832
90	24.309173107688945	25.685526513217365	25.684968831607506	24.32033154748618
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	75.63045380431174
2	45.785071012454566
3	55.36756621080103
4	52.976385782615324
5	48.62487690887692
6	45.361286117686625
7	43.40262658695377
8	48.38093257387619
9	47.07390537404076
10-14	48.91010138442624
15-19	49.50739415010109
20-24	48.964663686609036
25-29	49.00809325276378
30-34	49.14260464099478
35-39	49.07221471310729
40-44	49.07149824478151
45-49	49.09458437923128
50-54	48.986016909953705
55-59	49.0751438139336
60-64	48.94058927049421
65-69	48.879110192188485
70-74	49.01172650176938
75-79	48.96612001849783
80-84	48.83176838612015
85-89	48.93974449037786
90	48.629504655175126
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	4.0
1	2.5
2	3.5
3	3.5
4	4.5
5	7.5
6	8.5
7	18.5
8	27.5
9	36.0
10	44.0
11	70.5
12	123.5
13	207.5
14	346.0
15	587.0
16	1015.5
17	1666.0
18	2792.5
19	4860.5
20	6184.0
21	8274.5
22	13595.0
23	21731.5
24	33249.0
25	49616.0
26	72392.0
27	102451.0
28	137271.0
29	177685.5
30	200319.0
31	223544.0
32	271215.0
33	324131.0
34	380699.5
35	434392.0
36	488358.0
37	546756.0
38	596045.5
39	635778.5
40	656248.0
41	669856.0
42	695407.0
43	716560.5
44	728599.0
45	733878.0
46	729896.0
47	721269.0
48	719258.5
49	718126.5
50	716811.0
51	710947.0
52	702718.0
53	691608.0
54	684037.0
55	680853.0
56	668481.5
57	651824.0
58	631254.5
59	604480.5
60	589632.0
61	572188.5
62	537008.5
63	493536.0
64	441775.5
65	390917.0
66	335949.0
67	277667.0
68	225088.0
69	175904.5
70	151152.0
71	129480.0
72	91111.0
73	61088.0
74	37888.0
75	21419.5
76	11365.5
77	5704.5
78	2492.5
79	1054.0
80	626.0
81	453.5
82	217.0
83	125.0
84	76.5
85	48.5
86	26.0
87	11.5
88	10.5
89	7.5
90	6.0
91	5.5
92	4.0
93	1.5
94	0.0
95	0.0
96	0.5
97	0.5
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.41499670659282856
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0023941562971574876
8	0.0
9	0.0019903227048658633
10-14	0.0018807107298152792
15-19	1.9903227048658628E-4
20-24	0.0016028347579765188
25-29	0.0011249650070980965
30-34	0.0016720633737979402
35-39	0.004271020992760465
40-44	0.0035066216930656046
45-49	0.002393194788604412
50-54	0.0027229922223092388
55-59	7.643992996948605E-4
60-64	5.836356917167047E-4
65-69	2.711454119672335E-4
70-74	0.005585403184814396
75-79	0.0017787908231892981
80-84	0.0021951240266709013
85-89	0.002360503497799852
90	0.0011922706058133672
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0800647E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	51.298348965196496
#Duplication Level	Relative count
1	100.0
2	29.788715581728475
3	14.976921852618176
4	9.271048862008595
5	6.316648098042337
6	4.553955116982333
7	3.5731338532548147
8	2.8280678020054113
9	2.245145631067961
10++	25.395909597326117
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4327595	2.5998282	5.3096666	1
CCTGG	4336330	2.58888	6.105105	1
GAAGA	4496785	2.5738494	5.103631	2
CTTCT	4573660	2.545458	5.461748	1
CTGGA	4239705	2.4706814	8.576301	1
TCCAG	4107165	2.3823001	5.4482436	2
CTCCT	4026300	2.3100703	6.9917064	1
CTGGG	3797510	2.2777984	8.239075	1
CAGGA	3820985	2.2406025	5.3946385	1
CTTCA	3929310	2.200528	5.497368	1
CCCAG	3665140	2.191603	7.0988297	1
CTCCA	3787070	2.1864066	7.2610292	1
CAGAA	3731145	2.1256723	5.097262	1
CTCTG	3594900	2.0722048	6.342502	1
CTGGC	3149940	1.8805803	5.1622095	1
TGGAA	3289015	1.8708475	5.0748353	2
CTGAA	3303270	1.8702078	5.493346	1
CTCAG	3043920	1.7655807	5.956201	1
CTTTG	3072370	1.7179178	5.0947604	1
CTTGG	2828425	1.6380128	5.2867637	1
>>END_MODULE
